HIslands

Regions of No Alignment (RONA)

Choose RONA by Specie

Specie Accession	Specie Description	Specie Order	Specie Group	Estimated Time of Divergence (MYA)
PanPan1	Bonobo	Primates	Hominids	6.65
PanTro5	Chimpanzee	Primates	Hominids	6.65
GorGor5	Gorilla	Primates	Hominids	9.06
PonAbe2	Orangutan	Primates	Hominids	15.76
RheMac8	Rhesus	Primates	Old world monkeys	29.44
MacFas5	Crab-eating macaque	Primates	Old world monkeys	29.44
ChlSab2	Green Monkey	Primates	Old world monkeys	29.44
PapAnu2	Baboon	Primates	Old world monkeys	29.44
CalJac3	Marmoset	Primates	New world monkeys	43.2
SaiBol1	Squirrel monkey	Primates	New world monkeys	43.2
TarSyr2	Tarsier	Primates	Haplorhines	67.1
OtoGar3	Bushbaby	Primates	Strepsirrhines	74
MicMur2	Mouse lemur	Primates	Strepsirrhines	74
GalVar1	Malayan flying lemur	Dermoptera	Colugo	76
Mm10	Mouse	Rodentia	Rodents	90
HetGla2	Naked mole rat	Rodentia	Rodents	90
Rn6	Rat	Rodentia	Rodents	90
OryCun2	Rabbit	Lagomorpha	Rodents	90
OviAri3	Sheep	Artiodactyla	Even-toed ungulates	96
SusScr3	Pig	Artiodactyla	Even-toed ungulates	96
MusFur1	Ferret	Carnivora	Carnivores	96
TurTru2	Dolphin	Cetartiodactyla	Even-toed ungulates	96
ManPen1	Chinese pangolin	Pholidota	Pangolins	96
VicPac2	Alpaca	Artiodactyla	Even-toed ungulates	96
FelCat8	Cat	Carnivora	Carnivores	96
EquCab2	Horse	Perissodactyla	Odd-toed ungulates	96
BisBis1	Bison	Artiodactyla	Even-toed ungulates	96
CanFam3	Dog	Carnivora	Carnivores	96
BosTau8	Cow	Artiodactyla	Even-toed ungulates	96
TriMan1	Manatee	Sirenia	Afrotheria	105
MonDom5	Opossum	Didelphimorphia	Marsupials	159
MacEug2	Wallaby	Diprotodontia	Marsupials	159
OrnAna2	Platypus	Monotremata	Monotremes	177
AptMan1	Brown kiwi	Apterygiformes	Birds	312
GalGal5	Chicken	Galliformes	Birds	312
AquChr2	Golden eagle	Accipitriformes	Birds	312
XenTro7	X. tropicalis	Anura	Frogs	352
DanRer10	Zebrafish	Cypriniformes	Fishes	435

RONA with PonAbe2: Orangutan

Download Island sequence by clicking on the Island Accession hyperlink

View Region in UCSC or VISTA genome browser by clicking on the Location in hg38 hyperlink

Chromosome	Island Accession	Island Location in hg38	RONA Location in hg38	RONA Length	RONA overlap with Island
chrY	GI3560:7	6,236,256-6,265,115	6,234,816-6,255,732	20,917	Left
chrY	GI3560:7	6,236,256-6,265,115	6,259,665-6,274,357	14,693	Right
chrY	GI3560:30	12,680,136-12,762,378	12,599,115-12,709,274	110,160	Left
chrY	GI3560:30	12,680,136-12,762,378	12,709,550-12,720,556	11,007	Internal
chrY	GI3560:31	12,875,998-12,930,414	12,860,867-12,904,925	44,059	Left
chrY	GI3560:31	12,875,998-12,930,414	12,920,471-12,940,399	19,929	Right
chrY	GI3560:32	13,354,837-13,406,687	13,360,531-13,366,259	5,729	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,366,397-13,369,251	2,855	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,369,357-13,396,902	27,546	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,397,016-13,410,971	13,956	Right
chrY	GI3560:38	18,197,659-18,274,140	18,179,919-18,248,760	68,842	Left
chrY	GI3560:40	18,985,549-19,067,667	19,031,100-19,039,200	8,101	Internal
chrY	GI3560:40	18,985,549-19,067,667	19,041,872-19,042,965	1,094	Internal
chrY	GI3560:40	18,985,549-19,067,667	19,052,006-19,053,826	1,821	Internal
chrY	GI3560:41	19,681,347-19,735,246	19,604,250-19,702,279	98,030	Left
chrY	GI3560:41	19,681,347-19,735,246	19,702,932-19,707,305	4,374	Internal
chrY	GI3560:41	19,681,347-19,735,246	19,716,718-19,720,861	4,144	Internal
chrY	GI3560:41	19,681,347-19,735,246	19,721,315-19,731,804	10,490	Internal
chrY	GI3560:42	19,869,703-19,977,734	19,744,536-19,936,106	191,571	Left
chrY	GI3560:42	19,869,703-19,977,734	19,936,363-19,999,439	63,077	Right
chrY	GI3560:44	20,546,542-20,612,060	20,001,700-20,575,863	574,164	Left
chrY	GI3560:43	20,030,120-20,052,521	20,001,700-20,575,863	574,164	External
chrY	GI3560:44	20,546,542-20,612,060	20,579,697-20,582,586	2,890	Internal
chrY	GI3560:44	20,546,542-20,612,060	20,582,703-20,587,994	5,292	Internal
chrY	GI3560:44	20,546,542-20,612,060	20,589,583-20,609,577	19,995	Internal
chrY	GI3560:45	20,697,684-20,769,449	20,651,696-20,725,471	73,776	Left
chrY	GI3560:45	20,697,684-20,769,449	20,750,610-20,756,775	6,166	Internal
chrY	GI3560:45	20,697,684-20,769,449	20,761,382-20,768,801	7,420	Internal
chrY	GI3560:46	21,458,182-21,472,797	21,426,509-21,477,655	51,147	External
chrY	GI3560:47	22,039,508-22,074,760	22,049,732-22,068,168	18,437	Internal
chrY	GI3560:47	22,039,508-22,074,760	22,070,746-22,083,309	12,564	Right
chrY	GI3560:48	22,084,443-22,102,728	22,085,805-22,093,556	7,752	Internal
chrY	GI3560:49	22,656,520-22,686,182	22,652,764-22,673,350	20,587	Left
chrY	GI3560:50	23,514,972-23,543,766	23,522,829-23,543,422	20,594	Internal
chrY	GI3560:51	23,664,884-23,726,837	23,659,443-23,677,852	18,410	Left
chrY	GI3560:51	23,664,884-23,726,837	23,680,430-23,692,997	12,568	Internal
chrY	GI3560:51	23,664,884-23,726,837	23,695,493-23,713,031	17,539	Internal
chrY	GI3560:52	23,928,628-23,967,851	23,934,528-23,956,222	21,695	Internal
chrY	GI3560:57	25,708,766-25,748,756	25,713,903-25,735,586	21,684	Internal
chrY	GI3560:58	25,952,945-26,008,009	25,957,042-25,974,582	17,541	Internal
chrY	GI3560:58	25,952,945-26,008,009	25,977,078-25,989,645	12,568	Internal
chrY	GI3560:58	25,952,945-26,008,009	25,992,223-26,010,632	18,410	Right
chrY	GI3560:59	26,109,920-26,121,875	26,102,456-26,127,044	24,589	External
chrY	GI3560:60	26,127,464-26,162,173	26,127,193-26,147,785	20,593	Left
chrY	GI3560:62	57,153,461-57,214,796	57,203,837-57,206,735	2,899	Internal
chrX	GI0530:244	155,978,495-156,028,276	156,017,317-156,020,215	2,899	Internal
chr11	GI9547:1	87,793-128,925	87,575-102,819	15,245	Left
chr17	GI4028:1	60,001-117,632	113,331-116,157	2,827	Internal
chr18	GI7791:1	48,378-113,986	105,360-111,827	6,468	Internal
chr22	GI2583:11	16,539,124-16,579,784	16,558,073-16,568,494	10,422	Internal
chr21	GI4916:18	10,330,629-10,379,554	10,337,288-10,339,633	2,346	Internal
chr21	GI4916:18	10,330,629-10,379,554	10,343,391-10,344,997	1,607	Internal
chr21	GI4916:18	10,330,629-10,379,554	10,345,695-10,347,267	1,573	Internal
chr21	GI4916:18	10,330,629-10,379,554	10,347,839-10,349,992	2,154	Internal
chr21	GI4916:19	10,624,128-10,651,736	10,631,077-10,637,216	6,140	Internal
chr21	GI4916:19	10,624,128-10,651,736	10,641,634-10,642,917	1,284	Internal
chr21	GI4916:19	10,624,128-10,651,736	10,650,520-12,999,618	2,349,099	Right
chr7	GI8741:1	10,242-47,268	16,487-19,549	3,063	Internal
chr7	GI8741:320	159,249,835-159,323,463	159,312,569-159,318,177	5,609	Internal
chr6	GI2805:1	77,349-152,936	103,278-105,921	2,644	Internal
chr6	GI2805:1	77,349-152,936	106,845-121,768	14,924	Internal
chr5	GI1427:299	181,328,134-181,409,923	181,352,360-181,367,297	14,938	Internal
chr5	GI1427:299	181,328,134-181,409,923	181,368,204-181,370,868	2,665	Internal
chr5	GI1427:299	181,328,134-181,409,923	181,399,397-181,403,597	4,201	Internal
chr9	GI4965:283	138,280,480-138,331,780	138,304,684-138,319,908	15,225	Internal
chr9	GI4965:283	138,280,480-138,331,780	138,320,832-138,323,475	2,644	Internal
chr8	GI2409:1	171,934-203,425	167,013-181,953	14,941	Left

HIslands: Human Genomic Islands