HIslands

Regions of No Alignment (RONA)

Choose RONA by Specie

Specie Accession	Specie Description	Specie Order	Specie Group	Estimated Time of Divergence (MYA)
PanPan1	Bonobo	Primates	Hominids	6.65
PanTro5	Chimpanzee	Primates	Hominids	6.65
GorGor5	Gorilla	Primates	Hominids	9.06
PonAbe2	Orangutan	Primates	Hominids	15.76
RheMac8	Rhesus	Primates	Old world monkeys	29.44
MacFas5	Crab-eating macaque	Primates	Old world monkeys	29.44
ChlSab2	Green Monkey	Primates	Old world monkeys	29.44
PapAnu2	Baboon	Primates	Old world monkeys	29.44
CalJac3	Marmoset	Primates	New world monkeys	43.2
SaiBol1	Squirrel monkey	Primates	New world monkeys	43.2
TarSyr2	Tarsier	Primates	Haplorhines	67.1
OtoGar3	Bushbaby	Primates	Strepsirrhines	74
MicMur2	Mouse lemur	Primates	Strepsirrhines	74
GalVar1	Malayan flying lemur	Dermoptera	Colugo	76
Mm10	Mouse	Rodentia	Rodents	90
HetGla2	Naked mole rat	Rodentia	Rodents	90
Rn6	Rat	Rodentia	Rodents	90
OryCun2	Rabbit	Lagomorpha	Rodents	90
OviAri3	Sheep	Artiodactyla	Even-toed ungulates	96
SusScr3	Pig	Artiodactyla	Even-toed ungulates	96
MusFur1	Ferret	Carnivora	Carnivores	96
TurTru2	Dolphin	Cetartiodactyla	Even-toed ungulates	96
ManPen1	Chinese pangolin	Pholidota	Pangolins	96
VicPac2	Alpaca	Artiodactyla	Even-toed ungulates	96
FelCat8	Cat	Carnivora	Carnivores	96
EquCab2	Horse	Perissodactyla	Odd-toed ungulates	96
BisBis1	Bison	Artiodactyla	Even-toed ungulates	96
CanFam3	Dog	Carnivora	Carnivores	96
BosTau8	Cow	Artiodactyla	Even-toed ungulates	96
TriMan1	Manatee	Sirenia	Afrotheria	105
MonDom5	Opossum	Didelphimorphia	Marsupials	159
MacEug2	Wallaby	Diprotodontia	Marsupials	159
OrnAna2	Platypus	Monotremata	Monotremes	177
AptMan1	Brown kiwi	Apterygiformes	Birds	312
GalGal5	Chicken	Galliformes	Birds	312
AquChr2	Golden eagle	Accipitriformes	Birds	312
XenTro7	X. tropicalis	Anura	Frogs	352
DanRer10	Zebrafish	Cypriniformes	Fishes	435

RONA with GorGor5: Gorilla

Download Island sequence by clicking on the Island Accession hyperlink

View Region in UCSC or VISTA genome browser by clicking on the Location in hg38 hyperlink

Chromosome	Island Accession	Island Location in hg38	RONA Location in hg38	RONA Length	RONA overlap with Island
chrY	GI3560:7	6,236,256-6,265,115	6,234,816-6,255,732	20,917	Left
chrY	GI3560:7	6,236,256-6,265,115	6,259,632-6,274,357	14,726	Right
chrY	GI3560:9	6,873,229-6,936,925	6,874,138-6,883,605	9,468	Internal
chrY	GI3560:9	6,873,229-6,936,925	6,884,041-6,898,299	14,259	Internal
chrY	GI3560:10	7,248,636-7,305,399	7,248,567-7,259,549	10,983	Left
chrY	GI3560:30	12,680,136-12,762,378	12,599,115-12,709,274	110,160	Left
chrY	GI3560:30	12,680,136-12,762,378	12,709,550-12,720,556	11,007	Internal
chrY	GI3560:30	12,680,136-12,762,378	12,722,194-12,725,103	2,910	Internal
chrY	GI3560:30	12,680,136-12,762,378	12,726,826-12,735,594	8,769	Internal
chrY	GI3560:30	12,680,136-12,762,378	12,739,633-12,757,187	17,555	Internal
chrY	GI3560:30	12,680,136-12,762,378	12,760,653-12,771,058	10,406	Right
chrY	GI3560:31	12,875,998-12,930,414	12,860,864-12,904,913	44,050	Left
chrY	GI3560:31	12,875,998-12,930,414	12,904,962-12,907,525	2,564	Internal
chrY	GI3560:31	12,875,998-12,930,414	12,907,606-12,909,352	1,747	Internal
chrY	GI3560:31	12,875,998-12,930,414	12,909,411-12,911,845	2,435	Internal
chrY	GI3560:31	12,875,998-12,930,414	12,920,468-12,940,425	19,958	Right
chrY	GI3560:32	13,354,837-13,406,687	13,360,531-13,366,259	5,729	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,366,397-13,369,251	2,855	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,369,357-13,393,840	24,484	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,393,905-13,396,902	2,998	Internal
chrY	GI3560:32	13,354,837-13,406,687	13,397,016-13,410,971	13,956	Right
chrY	GI3560:38	18,197,659-18,274,140	18,179,919-18,248,739	68,821	Left
chrY	GI3560:40	18,985,549-19,067,667	18,983,439-18,988,285	4,847	Left
chrY	GI3560:40	18,985,549-19,067,667	19,031,100-19,039,205	8,106	Internal
chrY	GI3560:40	18,985,549-19,067,667	19,052,042-19,053,826	1,785	Internal
chrY	GI3560:41	19,681,347-19,735,246	19,606,052-19,702,279	96,228	Left
chrY	GI3560:41	19,681,347-19,735,246	19,702,919-19,705,986	3,068	Internal
chrY	GI3560:41	19,681,347-19,735,246	19,716,718-19,720,861	4,144	Internal
chrY	GI3560:41	19,681,347-19,735,246	19,721,315-19,731,804	10,490	Internal
chrY	GI3560:42	19,869,703-19,977,734	19,769,971-19,936,178	166,208	Left
chrY	GI3560:44	20,546,542-20,612,060	19,936,363-20,575,863	639,501	Left
chrY	GI3560:42	19,869,703-19,977,734	19,936,363-20,575,863	639,501	Right
chrY	GI3560:43	20,030,120-20,052,521	19,936,363-20,575,863	639,501	External
chrY	GI3560:44	20,546,542-20,612,060	20,579,697-20,582,587	2,891	Internal
chrY	GI3560:44	20,546,542-20,612,060	20,584,512-20,587,994	3,483	Internal
chrY	GI3560:44	20,546,542-20,612,060	20,589,827-20,604,665	14,839	Internal
chrY	GI3560:44	20,546,542-20,612,060	20,605,343-20,609,578	4,236	Internal
chrY	GI3560:45	20,697,684-20,769,449	20,612,564-20,725,471	112,908	Left
chrY	GI3560:45	20,697,684-20,769,449	20,750,610-20,756,775	6,166	Internal
chrY	GI3560:45	20,697,684-20,769,449	20,756,845-20,759,866	3,022	Internal
chrY	GI3560:45	20,697,684-20,769,449	20,761,381-20,768,801	7,421	Internal
chrY	GI3560:46	21,458,182-21,472,797	21,426,509-21,477,655	51,147	External
chrY	GI3560:47	22,039,508-22,074,760	22,049,732-22,068,168	18,437	Internal
chrY	GI3560:48	22,084,443-22,102,728	22,070,709-22,093,120	22,412	Left
chrY	GI3560:47	22,039,508-22,074,760	22,070,709-22,093,120	22,412	Right
chrY	GI3560:48	22,084,443-22,102,728	22,097,935-22,101,790	3,856	Internal
chrY	GI3560:49	22,656,520-22,686,182	22,628,041-22,673,350	45,310	Left
chrY	GI3560:50	23,514,972-23,543,766	23,522,829-23,568,156	45,328	Right
chrY	GI3560:51	23,664,884-23,726,837	23,659,443-23,677,852	18,410	Left
chrY	GI3560:51	23,664,884-23,726,837	23,680,393-23,713,031	32,639	Internal
chrY	GI3560:52	23,928,628-23,967,851	23,934,528-23,956,222	21,695	Internal
chrY	GI3560:57	25,708,766-25,748,756	25,713,903-25,735,586	21,684	Internal
chrY	GI3560:58	25,952,945-26,008,009	25,957,042-25,989,682	32,641	Internal
chrY	GI3560:58	25,952,945-26,008,009	25,992,223-26,010,632	18,410	Right
chrY	GI3560:60	26,127,464-26,162,173	26,102,458-26,147,785	45,328	Left
chrY	GI3560:59	26,109,920-26,121,875	26,102,458-26,147,785	45,328	External
chrY	GI3560:62	57,153,461-57,214,796	57,204,989-57,206,735	1,747	Internal
chrX	GI0530:91	55,455,443-55,524,002	55,478,458-55,486,721	8,264	Internal
chrX	GI0530:90	55,440,947-55,517,759	55,478,458-55,486,721	8,264	Internal
chrX	GI0530:91	55,455,443-55,524,002	55,488,301-55,494,746	6,446	Internal
chrX	GI0530:90	55,440,947-55,517,759	55,488,301-55,494,746	6,446	Internal
chrX	GI0530:237	153,706,716-153,736,548	153,712,804-153,714,482	1,679	Internal
chrX	GI0530:244	155,978,495-156,028,276	156,018,469-156,020,215	1,747	Internal
chr13	GI1541:82	47,933,498-47,992,178	47,986,378-47,988,538	2,161	Internal
chr11	GI9547:1	87,793-128,925	87,589-95,644	8,056	Left
chr11	GI9547:1	87,793-128,925	95,727-102,819	7,093	Internal
chr11	GI9547:7	1,691,238-1,750,282	1,737,729-1,761,966	24,238	Right
chr11	GI9547:65	20,656,480-20,731,503	20,679,769-20,727,284	47,516	Internal
chr11	GI9547:117	55,853,878-55,888,316	55,839,655-55,860,140	20,486	Left
chr10	GI5499:274	133,615,979-133,649,510	133,619,170-133,620,867	1,698	Internal
chr17	GI4028:1	60,001-117,632	113,577-116,781	3,205	Internal
chr17	GI4028:13	3,694,734-3,738,175	3,665,762-3,708,073	42,312	Left
chr17	GI4028:81	27,073,028-27,122,842	27,084,112-27,087,084	2,973	Internal
chr16	GI6565:4	946,922-970,548	916,250-963,865	47,616	Left
chr16	GI6565:202	90,100,399-90,142,179	90,118,487-90,121,662	3,176	Internal
chr15	GI0671:164	77,002,992-77,055,273	77,038,252-77,065,063	26,812	Right
chr14	GI7655:1	18,562,542-18,599,474	18,565,925-18,572,645	6,721	Internal
chr19	GI0331:76	36,244,872-36,322,120	36,242,571-36,249,401	6,831	Left
chr19	GI0331:76	36,244,872-36,322,120	36,253,650-36,255,879	2,230	Internal
chr19	GI0331:76	36,244,872-36,322,120	36,259,510-36,265,293	5,784	Internal
chr19	GI0331:79	37,258,637-37,326,664	37,303,788-37,305,482	1,695	Internal
chr19	GI0331:79	37,258,637-37,326,664	37,306,163-37,308,105	1,943	Internal
chr19	GI0331:109	47,961,578-48,007,128	47,958,111-47,971,413	13,303	Left
chr19	GI0331:114	50,075,318-50,152,967	50,082,442-50,090,851	8,410	Internal
chr19	GI0331:114	50,075,318-50,152,967	50,090,967-50,092,246	1,280	Internal
chr19	GI0331:114	50,075,318-50,152,967	50,092,766-50,095,545	2,780	Internal
chr19	GI0331:114	50,075,318-50,152,967	50,140,340-50,141,867	1,528	Internal
chr19	GI0331:114	50,075,318-50,152,967	50,142,859-50,162,705	19,847	Right
chr19	GI0331:116	50,569,189-50,630,142	50,608,611-50,615,375	6,765	Internal
chr19	GI0331:125	54,865,884-54,997,580	54,913,059-54,915,676	2,618	Internal
chr19	GI0331:125	54,865,884-54,997,580	54,915,989-54,923,514	7,526	Internal
chr19	GI0331:125	54,865,884-54,997,580	54,923,873-54,930,498	6,626	Internal
chr19	GI0331:125	54,865,884-54,997,580	54,930,598-54,933,552	2,955	Internal
chr18	GI7791:84	46,958,444-47,046,195	46,969,913-47,019,911	49,999	Internal
chr22	GI2583:5	12,710,863-12,792,240	12,726,205-12,776,206	50,002	Internal
chr22	GI2583:6	15,488,867-15,531,153	15,492,975-15,499,695	6,721	Internal
chr22	GI2583:9	15,904,125-15,935,964	15,930,718-15,934,648	3,931	Internal
chr22	GI2583:31	21,306,630-21,345,047	21,334,193-21,340,835	6,643	Internal
chr20	GI9671:1	67,293-159,598	81,565-91,642	10,078	Internal
chr20	GI9671:1	67,293-159,598	100,178-101,184	1,007	Internal
chr20	GI9671:1	67,293-159,598	101,937-103,093	1,157	Internal
chr20	GI9671:64	29,677,037-29,766,551	29,697,220-29,728,429	31,210	Internal
chr21	GI4916:3	5,445,792-5,511,620	5,449,007-5,499,011	50,005	Internal
chr21	GI4916:6	6,160,192-6,263,195	6,161,372-6,211,375	50,004	Internal
chr21	GI4916:11	7,471,515-7,593,652	7,497,408-7,550,889	53,482	Internal
chr21	GI4916:12	8,196,637-8,340,211	8,260,972-8,310,970	49,999	Internal
chr21	GI4916:14	8,403,233-8,530,723	8,472,361-8,527,010	54,650	Internal
chr7	GI8741:1	10,242-47,268	16,987-20,240	3,254	Internal
chr7	GI8741:120	55,731,961-55,775,002	55,733,027-55,736,116	3,090	Internal
chr7	GI8741:165	77,003,727-77,093,122	77,065,668-77,066,757	1,090	Internal
chr7	GI8741:302	152,264,154-152,314,527	152,286,194-152,297,768	11,575	Internal
chr6	GI2805:1	77,349-152,936	74,201-84,475	10,275	Left
chr6	GI2805:1	77,349-152,936	98,772-102,536	3,765	Internal
chr6	GI2805:1	77,349-152,936	103,275-105,958	2,684	Internal
chr6	GI2805:1	77,349-152,936	106,859-114,594	7,736	Internal
chr6	GI2805:1	77,349-152,936	114,677-121,768	7,092	Internal
chr6	GI2805:6	2,064,249-2,110,261	1,991,336-2,135,786	144,451	External
chr6	GI2805:7	2,133,721-2,169,334	1,991,336-2,135,786	144,451	Left
chr6	GI2805:120	65,768,535-65,803,497	65,784,657-65,787,811	3,155	Internal
chr6	GI2805:120	65,768,535-65,803,497	65,793,004-65,794,552	1,549	Internal
chr5	GI1427:114	69,608,793-69,661,847	69,625,505-69,629,586	4,082	Internal
chr5	GI1427:117	70,459,994-70,519,273	70,481,481-70,485,225	3,745	Internal
chr4	GI6247:17	4,225,843-4,260,327	4,232,130-4,235,540	3,411	Internal
chr4	GI6247:17	4,225,843-4,260,327	4,237,931-4,244,487	6,557	Internal
chr4	GI6247:79	49,551,371-49,628,816	49,592,282-49,594,498	2,217	Internal
chr4	GI6247:259	189,981,560-190,038,593	189,989,809-189,992,472	2,664	Internal
chr2	GI6890:2	1,502,940-1,542,221	1,522,669-1,546,945	24,277	Right
chr2	GI6890:192	86,778,580-86,816,324	86,790,924-86,800,185	9,262	Internal
chr2	GI6890:197	87,662,713-87,706,235	87,697,989-87,700,374	2,386	Internal
chr2	GI6890:284	132,197,755-132,289,207	132,220,055-132,247,472	27,418	Internal
chr2	GI6890:422	233,533,070-233,588,745	233,541,350-233,582,287	40,938	Internal
chr1	GI7203:282	143,289,401-143,336,018	143,311,975-143,313,598	1,624	Internal
chr1	GI7203:355	161,419,497-161,498,228	161,428,194-161,439,479	11,286	Internal
chr1	GI7203:497	228,555,180-228,645,510	228,531,331-228,556,385	25,055	Left
chr1	GI7203:497	228,555,180-228,645,510	228,557,615-228,608,434	50,820	Internal
chr1	GI7203:521	239,935,747-239,974,607	239,931,588-239,962,729	31,142	Left
chr1	GI7203:521	239,935,747-239,974,607	239,964,345-239,972,789	8,445	Internal
chr1	GI7203:540	248,731,730-248,783,943	248,766,592-248,770,583	3,992	Internal
chr1	GI7203:540	248,731,730-248,783,943	248,773,773-248,775,490	1,718	Internal
chr1	GI7203:540	248,731,730-248,783,943	248,776,094-248,777,243	1,150	Internal
chr9	GI4965:74	41,224,950-41,289,101	41,253,770-41,260,112	6,343	Internal
chr9	GI4965:80	42,711,685-42,767,713	42,719,984-42,721,341	1,358	Internal
chr9	GI4965:88	62,327,077-62,370,026	62,360,728-62,371,696	10,969	Right
chr9	GI4965:104	66,244,765-66,293,720	66,291,741-66,294,275	2,535	Right
chr9	GI4965:282	138,214,717-138,256,777	138,233,481-138,237,223	3,743	Internal
chr9	GI4965:283	138,280,480-138,331,780	138,304,684-138,311,774	7,091	Internal
chr9	GI4965:283	138,280,480-138,331,780	138,311,857-138,319,894	8,038	Internal
chr9	GI4965:283	138,280,480-138,331,780	138,320,795-138,323,478	2,684	Internal
chr9	GI4965:283	138,280,480-138,331,780	138,324,217-138,327,979	3,763	Internal
chr8	GI2409:248	144,200,256-144,247,562	144,173,279-144,239,268	65,990	Left

HIslands: Human Genomic Islands